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    Rodent brain processing for histological analyses (update)

    Miquel Vila

    Published: 2024-06-18 DOI: 10.17504/protocols.io.e6nvwj61wlmk/v3
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    Abstract

    Protocol for rat brain processing in order to perform histological analyses

    Steps

    Rat perfusion

    1.

    Deeply anesthetize animals with sodium pentobarbital (50 mg/kg, i.p.)

    2.

    Perfuse through the left ventricle with saline [0.9% (wt/vol)] at room temperature (RT)

    3.

    Perfuse again with ice-cold formaldehyde solution 4% in PBS buffered for histology

    Postfixation

    4.

    Remove brains and post-fix them for 24 h in the same fixative

    Processing for microtome sectioning

    5.

    Wash twice with 0.1 M PBS and process for paraffin embedding following standard procedures (performed by an external facility)

    Alternatively, brains could be stored in 0.1 M PBS at 4 °C (not for over a month without changing the PBS) prior paraffin processing

    Processing for cryostat sectioning

    6.

    Cryoprotect for 24-48 h (until they sink) in 30% sucrose at 4 °C

    7.

    Exchange sucrose for 0.1 M PBS

    8.

    Immerse brains in cold (-30ºC) 2-methylbutane for 30 s and store at -80 °C

    9.

    Include in OCT

    Sectioning

    10.

    Perform sectioning with a sliding microtome at 5-μm-thickness for paraffin samples or

    in a cryostat at 20- or 30-μm-thickness for frozen samples.

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