crosslinking.m:

Method to run cross-linking samples on TimsTof pro instrument. Method and energies are specifically

optimized for PhoX cross-linker reagent (by Richard Scheltema and Markus Lubeck (Brucker))

Standard_DDA_PASEF_1.1sec_cycletime_2segm_1st_15min_nospectra.m:

Method for classical bottom-up (proteomics) experiments. Optimized for LC systems that are operated

without a trap and are euqipped with a 5 µL sample loop (flowrate 0.400 µL/min), as the Method is segmented: The

first 15 min of the method no spectra are saved. To further reduce the file size the noise filtering for Tims is turned on. (by Richard Scheltema and Markus Lubeck (Brucker))